Welcome to RetroDetector’s documentation!

RetroDetector is a pipeline for identifying fixed and segregating retrocopies from short- and long-read whole genome sequencing data.

Note

This project is under active development.

Indices and tables

• Index

• Module Index

• Search Page

Contents

• Quick Start
• Installation and Dependencies
  • Installation
  • Dependencies
• Configuration
• RetroDetector Pipeline
• Results
• Example Dataset
  • Drosophila melanogaster
• FAQs
  • What do I do if I have more than one set of short-read FASTQ files or more than one long-read FASTQ file for a given sample?
• Advanced Parameters